rs46185846 SNP Detail

Summary

• ID
  rs46185846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:74920576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAATAA TGAGCTACAA
  TATGAAAGTA TAACCCTTAA CTCCCCAAGA TGCTTCAGTC ATGGTGTTTC ATCACAGCAA
  TAGAAATCCT GACTAAGACA ACATATATCA ACTTAGATAC ACTTTACTTC CAACACAGGA
  TGTACAATGC GAAGCCAGTA CCTTCCCTTT AAAACTTGTC TCTTCCTTCA CAAATTCTTA
  Y
  GCCAGAAACC TCCAGTGTTT TCCTTAGCTC CTAGTTAATT CCTAGTTAAT TACTAAGTCC
  TGCCAATTCT GTCTCTCAGT ATCTTAGGAA TCCTCTACTT CCTGTCCCCA ATACTGCTGT
  CACCACCCAC CTTGTTTGCT CTCACATCCT CTCTGCCCCT CTAGCCCAAA TCCATCCTCC
  ACGTGGCCAG GCTATTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62461887	NES17263471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46185846					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62461887	NES17263471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:74920576 () rs orientation: forward

Symbol	Name	Function Class
Htr2a	5-hydroxytryptamine (serotonin) receptor 2A	within coordinates
Tssr126578	transcription start site region 126578	468 bp upstream