rs46185966 SNP Detail

Summary

• ID
  rs46185966
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24829570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGCACTTA ATAATGAGTT AGGGATCGAA GCAAGAAGCA
  TTGCCCCATC CGTCGGTGCG TGTGATCTTC AGCTCTGAGC CCTTGCCAGA CCCAGACCCA
  C
  CCGTGATGAA CTTCAAGACT GTGTACAAGT ATCTTTGAAA ATGCACCTGC ATGCCCATCT
  TCCACAAATC GCTGCAAGCA TTCTGTGTCC ACACAGCTC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148097913	ENSMUSSNP7225825	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46185966					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24829570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15616	CpG island 15616	within coordinates
Gm71653	predicted gene, 71653	within coordinates
Rr608375	regulatory region 608375	172 bp distal
Rr608376	regulatory region 608376	within coordinates
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1919 bp upstream
Tssr50356	transcription start site region 50356	1892 bp upstream
Tssr50357	transcription start site region 50357	1089 bp upstream
Tssr50358	transcription start site region 50358	127 bp upstream