rs46186276 SNP Detail

Summary

• ID
  rs46186276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97149172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTGTGA TCTACTAGAA
  TGAATCAATC CCTCCCCCCT CGTGTGTGTG AATGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTATACG TGTGTACGTG TGTACCTCAT TGCCAGGTAG CAATCATAAT AACAGACTGT
  AAAAGGGAGT GTTCTTAGGA TTGAGTTTTC TTACATTAAG TATACATTAA GTATTCAGGA
  K
  TCAGAGCACT GGACGCTAAG GGTCACACAA AAGAGTCAGT GACTCTACCT TGGGTCCTTG
  TCTCACAGGC TCAAGAAAGA AATTCACAAG ACAAGAAGAG TCTTCTTAGG AGGGAACTTT
  TTATTCTAGA GATGCAGCTT TGAAGGAGAT TAAAGATCTA TTGCAGAAAG CAGAGCTCGG
  GAGAGGTTCC AAGGGAAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63609775	NES17041939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		G	T	T		G
ss325076431	CHEV_15_97081722	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46186276					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609775	NES17041939	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97149172 () rs orientation: forward

Symbol	Name	Function Class
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1772 bp distal
Rr308785	regulatory region 308785	1372 bp distal
Rr308786	regulatory region 308786	229 bp proximal