rs46187053 SNP Detail

Summary

• ID
  rs46187053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC ACATTACCAC ACAGTTCAGA
  M
  AGCACAGACA GGAGAAACCC TTTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144526836	ENSMUSSNP2725352	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321701911	CHEV_5_137624267	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46187053					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177244 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	863 bp downstream
Tssr49309	transcription start site region 49309	1382 bp upstream
Tssr49310	transcription start site region 49310	1742 bp upstream
Tssr49311	transcription start site region 49311	1756 bp upstream
Tssr53917	transcription start site region 53917	1690 bp upstream
Tssr53918	transcription start site region 53918	1630 bp upstream
Tssr53919	transcription start site region 53919	1242 bp downstream
Tssr53920	transcription start site region 53920	1258 bp downstream
Tssr53921	transcription start site region 53921	1413 bp downstream
Tssr53922	transcription start site region 53922	1454 bp downstream
Tssr53923	transcription start site region 53923	1495 bp downstream
Tssr53924	transcription start site region 53924	1509 bp downstream
Tssr53925	transcription start site region 53925	1547 bp downstream
Tssr53926	transcription start site region 53926	1578 bp downstream
Tssr53927	transcription start site region 53927	1727 bp downstream
Tssr53928	transcription start site region 53928	1745 bp downstream
Tssr53929	transcription start site region 53929	1782 bp downstream
Tssr53930	transcription start site region 53930	1847 bp downstream
Tssr53931	transcription start site region 53931	1872 bp downstream
Tssr53932	transcription start site region 53932	1888 bp downstream
Tssr53933	transcription start site region 53933	1926 bp downstream
Tssr53934	transcription start site region 53934	1958 bp downstream