rs46188072 SNP Detail

Summary

• ID
  rs46188072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45575954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC TTCCCTATAT TGTCATCCTC
  W
  CCATATTAAT TTTCTTTATT TCAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148351276	ENSMUSSNP4827435	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321526908	CHEV_5_45809851	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46188072					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45575954 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	1472 bp upstream
Rr611049	regulatory region 611049	1127 bp proximal
Rr611050	regulatory region 611050	1351 bp proximal
Rr611051	regulatory region 611051	1627 bp proximal
Rr611052	regulatory region 611052	1716 bp proximal