rs46188290 SNP Detail

Summary

• ID
  rs46188290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119824855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCATCTA TCCCTATGTG GGCCTCAGAC GAGATTTCCA
  AGGGATTTTT GGAAAGTCAA GGAGGGGGAC TGTAGTTCCT TATTCTCTCC GTGTGGAAAT
  R
  TGGAGATACA GGAGGAGGTA ACCAGGATGG AGGAGTAGCA GATAAAAGGA GACACCCGCA
  CCCCTCCCAC ACACACACAC ACCAATCTGC CCACATAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss61463922	NES16583241	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	G	G	A	A		A		A
ss321665999	CHEV_5_120136799	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs46188290					SNP	G	G	G	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61463922	NES16583241	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119824855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	273 bp proximal
Cpgi16461	CpG island 16461	1098 bp proximal
Gm71505	predicted gene, 71505	1374 bp upstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	67 bp upstream