rs46189778 SNP Detail

Summary

• ID
  rs46189778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTCAGTC GAGCACTCGC CTACCATTTA TGAAGCCATT
  TGAGCACGGT GGTTCATGCC TACAATCCCC ACGCTACAGT CAGACAGTCA GACTCACTGT
  Y
  ATTCTTGGGG AGCTCAAGGG CAGCCAGTTT CAGACCCTGT TTGGGGGAGG CCAAGTACTT
  CAGGGACCAT ACCTAAAACA AGCTTGCTAA ATAGGTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147514274	ENSMUSSNP7237553	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320498561	CHEV_2_126756800	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46189778					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772984 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1703 bp proximal
Gm75308	predicted gene, 75308			1629 bp upstream
Rr564422	regulatory region 564422			1265 bp proximal
Rr564423	regulatory region 564423			1991 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			837 bp downstream
Tssr26085	transcription start site region 26085			1929 bp downstream