rs46190185 SNP Detail

Summary

• ID
  rs46190185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107460733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGTGAA GGATGTAGAC
  ATATGAAATA ATGATTACGA ACAGGGTGAT GACGATGATG GAGCCTGCTG AGATGGCAGG
  AGACATTTCA GCAACATAAA CATGGGTACA GGAAAGCTCC ACCAGTGGTG GGAGATCACA
  GAAGAAATGG TTGACTTTAT TTGGTCCACA AAAAGTCAGG CTCAATAAAC AACTGGTACA
  Y
  GATGAAGAAT TCACACATCC ACCCATGTAG GAAATAACCA ATAAGATGAG GCAGACCTTG
  GGAGACATGA GAGTGGAGTA GAGCAGGGGT GAGCAGATGG CCACATAGCG ATCATAGTCC
  ATGGCAGCCA GCAGGAAGAA CTCAGCAGTC CCAAAGACCA CATCAGAGCC AAGCTGGACT
  ATGCAACCAG CCACAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61045696	NES16080008	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T		C	C	T	T		T
ss322381992	CHEV_7_115005040	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46190185					SNP	T	T	T	T	T	C	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045696	NES16080008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107460733 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	1513 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	within coordinates
Rr652939	regulatory region 652939	1365 bp proximal
Tssr68454	transcription start site region 68454	1434 bp upstream