rs46190554 SNP Detail

Summary

• ID
  rs46190554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34790412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGCCAGATCT TCCGAACTTT GAGTTACAGA CATTGTGAGT
  TGCCATGGAG ATTCTGGGAA TTGAACCTGG GTCCTCTGGA AGAGCAGCCA GTGCTCTTAA
  Y
  AGCTGAGCTA TCTTTCCAAC CCAGGCTTTT TAATTCTTGG TCAGATGTCA TCCGTAGCTA
  TGAACTTGGG ATCCCTTGTA CCTTATACTT ACAGCAGCCT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148218992	ENSMUSSNP5853115	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46190554					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34790412 () rs orientation: forward

Symbol	Name	Function Class
Add1	adducin 1	760 bp downstream
Mfsd10	major facilitator superfamily domain containing 10	576 bp downstream
Tssr50667	transcription start site region 50667	1638 bp downstream
Tssr50668	transcription start site region 50668	1789 bp downstream
Tssr50669	transcription start site region 50669	1817 bp downstream
Tssr50670	transcription start site region 50670	1885 bp downstream
Tssr50671	transcription start site region 50671	1943 bp downstream