rs46192238 SNP Detail

Summary

• ID
  rs46192238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GTGTTTGCCT TACTTGAGAC
  R
  TGCAGTCATA TCAGTTGGTT AGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62393446	NES17236631	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G		A	G	A		G
ss139557196	ENSMUSSNP3895699	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss324635237	CHEV_14_54795049	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46192238					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393446	NES17236631	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412831 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1763 bp distal
Rr492148	regulatory region 492148	980 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	897 bp upstream
Traj42	T cell receptor alpha joining 42	399 bp upstream
Traj43	T cell receptor alpha joining 43	576 bp downstream
Traj44	T cell receptor alpha joining 44	1624 bp downstream
Tssr125558	transcription start site region 125558	1840 bp downstream
Tssr125559	transcription start site region 125559	1820 bp downstream
Tssr125560	transcription start site region 125560	1784 bp downstream
Tssr125561	transcription start site region 125561	1770 bp downstream
Tssr125562	transcription start site region 125562	973 bp downstream
Tssr125563	transcription start site region 125563	748 bp downstream
Tssr125564	transcription start site region 125564	495 bp downstream
Tssr125565	transcription start site region 125565	406 bp downstream
Tssr125566	transcription start site region 125566	600 bp upstream
Tssr125567	transcription start site region 125567	834 bp upstream
Tssr125568	transcription start site region 125568	853 bp upstream
Tssr125569	transcription start site region 125569	879 bp upstream
Tssr125570	transcription start site region 125570	897 bp upstream
Tssr128543	transcription start site region 128543	1283 bp downstream