rs46192538 SNP Detail

Summary

• ID
  rs46192538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT GTACATTTGT AGGGAGTGAA
  R
  TCAATCTACT CTTGAAAACT GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145462174	ENSMUSSNP6292177	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss319965149	CHEV_1_130484839	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46192538					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515999 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	399 bp distal
Rr28453	regulatory region 28453	601 bp proximal
Tssr195	transcription start site region 195	1321 bp upstream
Tssr13461	transcription start site region 13461	156 bp downstream
Tssr13462	transcription start site region 13462	342 bp downstream
Tssr13463	transcription start site region 13463	438 bp downstream
Tssr13464	transcription start site region 13464	495 bp downstream
Tssr13465	transcription start site region 13465	513 bp downstream
Tssr13466	transcription start site region 13466	578 bp downstream
Tssr13467	transcription start site region 13467	625 bp downstream
Tssr13468	transcription start site region 13468	714 bp downstream
Tssr13469	transcription start site region 13469	767 bp downstream
Tssr13470	transcription start site region 13470	862 bp downstream
Tssr13471	transcription start site region 13471	931 bp downstream
Tssr13472	transcription start site region 13472	1000 bp downstream
Tssr13473	transcription start site region 13473	1013 bp downstream
Tssr13474	transcription start site region 13474	1069 bp downstream
Tssr13475	transcription start site region 13475	1093 bp downstream
Tssr13476	transcription start site region 13476	1110 bp downstream
Tssr13477	transcription start site region 13477	1171 bp downstream