rs46193607 SNP Detail

Summary

• ID
  rs46193607
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAAGGA GACTGCCACA CTAGGCCTAG CTTGAGCATA
  GGAGACCACA AAGCCCATCT CCACAGTGAC ATACTTCCTC CAACAAGGTC ACACCTACTC
  C
  AATAAGGACC CAAGAGTGCC ACTCCCCATG GCCAAGCATT CACACACACT AGTCGATGTG
  CGCCATTCCT GTTCATACCA CTGCTACTAG AAACACTGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132214948	ENSMUSSNP7197082	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46193607					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1536 bp proximal
Gm12258	predicted gene 12258	1665 bp upstream
Rr246822	regulatory region 246822	1281 bp proximal
Rr402593	regulatory region 402593	1398 bp upstream
Tssr101753	transcription start site region 101753	1660 bp upstream