rs46193800 SNP Detail

Summary

• ID
  rs46193800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992384 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TTTTGGATGT GCCTTATGCA CGACAAACTC CTCAAGAGCC
  ACGGGTGTAT AAGAGTACTA GTTTTCATTT AAATTATACA TTATGCTTTG TGCATAATGT
  R
  GATAAACCTT TTACACCCTG TATATTTTTT AAGAAAAAGA TTATCTCTAA TTGGGCAGAT
  CAAATTAATA CTGCTGACAC TATAAGTCAG ATAGCAGAAA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139867083	ENSMUSSNP2485898	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss144894861	ENSMUSSNP247600	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C	C
ss147836088	ENSMUSSNP3249864	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	T	C
ss148870133	ENSMUSSNP3645181	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46193800					SNP	?	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992384 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates