rs46195190 SNP Detail

Summary

• ID
  rs46195190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27254988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGACTT GAACTCAGGA
  CCTTGGGAAG AACAGTTGGT GCTCTTAACC ACTGAGCCAC CTCACCAGCC CGAGAGCTGT
  CTTTTTAAAA ATGTTAATTT TGTCAATTTC CTCTATTCCG AGAGTCAGTG CAAGAGATGG
  ACTTTTAAAA ACACTCCTCT GTGTTTGTGT GTATGTCCGT GTGGCTGAGC ATGTGGTACC
  Y
  GCCTGCAGAT GCTAAAGTTG GATGTCTTAC TCAATTATTC TTTACCTTAT ATTTTAAATC
  AGGGTCTCTC ACTGAACACG GAGCTTACCC ATTTGGGCAC ACAGGATGGC TAATGAGCTC
  CAGGGATCCT CCAATCTTCA CTTCCCCAGT GCTTGGCTTT ATAAAAAGTG GGTGGTGGGG
  ATTTGAACTC AGGTCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60985701	NES16135608	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46195190					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985701	NES16135608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27254988 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	within coordinates
Cpgi18668	CpG island 18668	1911 bp distal
Gm45975	predicted gene, 45975	981 bp upstream
Gm74065	predicted gene, 74065	within coordinates
Rr167329	regulatory region 167329	987 bp distal
Tssr65297	transcription start site region 65297	1118 bp upstream