rs46195312 SNP Detail

Summary

• ID
  rs46195312
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGTTGT TGTTGTTTTT
  CAACATAGCT AATAGCTAAT ATAGATCTTG AGGAGAGGAA CAATTCTCCA ATGGGGATCT
  ACTCCAGGCT TCCCAGGTGT AGGAGCTAAG ATGTTGTTTC TTTTGCCTTG GAACTAAGGA
  GATCTTTATT CAGTTCTATT TGAGTAGCAC TCTACGTGAC TACCAAGGTT ATATCCACTT
  R
  AAGGACTGCC GGCATAGCAA GCAGAAGTAG GAAACAACTT TGGGAAGGAG ATGCCCAGTG
  AGACGCAATA CCTCCCCTAC ATGCACGCAA GCACTTCTAT ACGCAAACCC CGCTCTTCAC
  GCTCATCAAA TGGATGTAGG AAAGCAAGAA AGCCCAGGTT CATCATGATG GTGGAGAAGA
  CCTATCTTAA GACATAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500620	NES16526864	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A	A	G		A	A	A	A		A
ss325260807	CHEV_16_84558075	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46195312					SNP	A	A	G	A	A	G	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500620	NES16526864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354718 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	452 bp upstream
Rr404934	regulatory region 404934	1827 bp upstream
Rr518505	regulatory region 518505	423 bp proximal
Rr518506	regulatory region 518506	524 bp proximal
Rr518507	regulatory region 518507	1815 bp proximal
Rr518508	regulatory region 518508	1946 bp proximal
Tssr139145	transcription start site region 139145	662 bp downstream