rs46196271 SNP Detail

Summary

• ID
  rs46196271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:48730149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTTTAA TTTATTTGGT
  CATTCAATTT ATTTGTTTGT AACCCCTGAT TCTCAATGAA ATCGATAGGC TCAAACTAGC
  TGTAAAGGTT CTGAGCATGA AAGCAACACC ATTACCATTG TGGTTTTAAA GCCTGGTCCT
  AAGAAGTTGT CACTAATCTT GAGTTCTAAG GGATGTCATG TGCCTTGCAG CACCAGGGCA
  Y
  ATGGCTGCTA AGTATCCACA GTGTCTCTTG CTGGTCACTG CTTTCCTTCA AGGCCTGAAC
  GAAGGGATAG TGACCAATGG GAGAGTCATG TGTATTTACG GCAGTGACAA GTCCAAGAGA
  TTGGGAAACA AGTGCCATTT TGATAAAAAA AAATATGTAA GAAGAGGAAA AAAAGACAAT
  ATACTGACAG TCTAATCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52271688	NES15309144	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46196271					SNP	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52271688	NES15309144	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:48730149 () rs orientation: forward

Symbol	Name	Function Class
Gm3473	predicted gene 3473	527 bp downstream
Gm67268	predicted gene, 67268	1908 bp upstream
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates