rs46196908 SNP Detail

Summary

• ID
  rs46196908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46990194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGATTA GCCCCTCACA
  GAGCGTTCTT GTCAAGCTGA TCCGTTGTCC CTGGGGTCAC CCAGGGTGTC TACAGGCACG
  AGGAGTTCCT TTGACAGCTG TGGCTCGTAT GCTGCCAGGA CTAGAAACTT AAACCAGAAA
  GGTATGTGTA TACTGAGAGT CGGGGGCAGG GAGGAGCGCC CTCAACTTTC TCAGCCGGAC
  W
  ATTGTTAGCG AACACGCCAC TTCCAGCAGC CCTGCCCCTG TCTGGGTCTC TAGAGGAGAG
  ATGGGGTAGG AGTGTAGATT GGAAAGAGGA AAGAAAGCAA AAATACCTTT GGGCAGGACA
  AGAGAAAGCC CCAAAGATGA GAGGGGCCAC GGCTTTGTAA AGACAGCCGG CCAGCCTAGT
  GATAACAGGT ATATCTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss62758079	NES17351014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs46196908					SNP	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758079	NES17351014	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46990194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	1186 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	1521 bp upstream
Rr527794	regulatory region 527794	within coordinates
Rr527795	regulatory region 527795	722 bp proximal
Tssr5136	transcription start site region 5136	1508 bp downstream
Tssr5137	transcription start site region 5137	1667 bp downstream
Tssr144870	transcription start site region 144870	475 bp downstream
Tssr144871	transcription start site region 144871	441 bp downstream
Tssr144872	transcription start site region 144872	1156 bp upstream
Tssr144873	transcription start site region 144873	1712 bp upstream
Tssr144874	transcription start site region 144874	1770 bp upstream
Tssr148364	transcription start site region 148364	686 bp upstream
Tssr148365	transcription start site region 148365	646 bp upstream
Tssr148366	transcription start site region 148366	624 bp upstream
Tssr148367	transcription start site region 148367	1458 bp downstream
Tssr148368	transcription start site region 148368	1481 bp downstream
Tssr148369	transcription start site region 148369	1496 bp downstream
Tssr148370	transcription start site region 148370	1518 bp downstream
Tssr148371	transcription start site region 148371	1579 bp downstream
Tssr148372	transcription start site region 148372	1602 bp downstream