rs46197107 SNP Detail

Summary

• ID
  rs46197107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45862796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGATG GCTCAGCTCT
  TAAGAGCACT GACTGCTCTT TCAAAGGTCC CGAGTTCAAT TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCTAATGCCC CTTCTGGTGT TCTGGTGTGT CTGAAAACAG CTACACTGTC
  CTCATATACA GAAAATAAAT AAATAAATCT TTAAAAAAAA AAAAGGACAA TTCCCTTTGG
  Y
  CAACTTCAGA ACTCCCAAGA GACTACTCCC ATCTTCTCTG GTCATAAACA ATATCTTTCC
  TTGGAAGCGC CAGGGAATGG GGGATTGAAA GGAGGGGGCA GTGAAAGAAG TTGACCGCCT
  GGTCACCATG GAAACTGGGC CTGTTTCCCT GAAGATAAGC CTAGTGCAGT GGGCAGGGGT
  GGGAAGTAGG GCTATCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259854	NES15755808	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46197107					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259854	NES15755808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45862796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	1885 bp distal
Rr405301	regulatory region 405301	260 bp upstream
Rr527424	regulatory region 527424	1703 bp distal
Rr527425	regulatory region 527425	within coordinates
Rr527426	regulatory region 527426	799 bp proximal