rs46197113 SNP Detail

Summary

• ID
  rs46197113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97953987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATGGCC TCACACTTAT
  TTGCTGCCCC ATAATTACCT CTTTTAAAGG TCCTGTCTCC AAATATAGTT TAATTCTGAG
  CTAGGGCTTC AACATAGACA TTTTGGTGGG CAGTATTTAG TCCATAACAT TTTTCCCTTC
  ACTATGCAAT CGGTGAAGGG TTAGGAGTGA GAGGTAAGAG TATATATTTT CTGCTTAAGA
  Y
  CAGAAATTGG AGATTTCAAC TTTATTATCT ACACACCCAG CAATGCCTTA GTGGCCAGCA
  GTACCAATTG CATTAGCTCC TTGAGGCCCC ATTTTCTTTC CTCTAAAATA TGCATGTAGC
  AGGCTGCCTA TTTAGTAAAT GTTGATTAAA GCCCTACAGT TTCCTAAGCA CTGTTTTCAG
  GCTAAGGAAA CAGCAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61683852	NES17636121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	C
ss324132338	CHEV_12_99225938	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs46197113					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683852	NES17636121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97953987 () rs orientation: forward

Symbol	Name	Function Class
Rr387674	regulatory region 387674	500 bp upstream