rs46197272 SNP Detail

Summary

• ID
  rs46197272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATGCCC TTGCCAAATC
  TTTAACTTCA TTCTGTGTGA TATATAGCAT ACTATAATGA CTCAGCCTTT TTCTAGCACG
  TCTAACATAC TCTCCTACAG GGGCACTATC GGGTGGTGTT TCCTTCCAGT CCCTACCCAA
  AGAAATGCCA TTTGTGTTCT CATCAGAAAT TGGAAAAACC AATAAATCTT CATTGATGCT
  Y
  TTATTTTATT TTAATCACAA TACGATCTAG AAAAGAAGCA CAACTCACGA ATAGGCCCCC
  AAACCAAGCA CTATACGTTT CAAATGAAGT AGAGATGTCA AAGTGATGAG ACACCCTCAA
  ACCACACATT TGAGTAGAGA TGCAGGGTGT TCACCATCTT GCCCATGGCA AAGCATGAGC
  TAGATTCTAA AGTCCTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146323466	ENSMUSSNP2337294	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320151880	CHEV_1_177561577	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46197272					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459012 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	747 bp upstream
Rr396618	regulatory region 396618	372 bp upstream
Tssr10313	transcription start site region 10313	522 bp upstream
Tssr10314	transcription start site region 10314	550 bp upstream
Tssr10315	transcription start site region 10315	569 bp upstream
Tssr10316	transcription start site region 10316	598 bp upstream
Tssr10317	transcription start site region 10317	618 bp upstream
Tssr10318	transcription start site region 10318	650 bp upstream
Tssr10319	transcription start site region 10319	658 bp upstream
Tssr10320	transcription start site region 10320	674 bp upstream
Tssr10321	transcription start site region 10321	695 bp upstream
Tssr10322	transcription start site region 10322	709 bp upstream
Tssr10323	transcription start site region 10323	723 bp upstream