rs46197480 SNP Detail

Summary

• ID
  rs46197480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45865280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGTTGT TAGCCCACCT
  GTGGATGTTG GGAATTGAAC CTGGGTCATT TTCAAGAGTG GCTCCATATG TTTGCAAACG
  AGTGAATGGA TGAAGAAAAT AAGGTTTTTT TGGGGGGGGA GGCAGAAGAG AATGGCTCAT
  AATAGCTATC TCTGCTAGCT CCCCCATCCC CCAGTACCAA GGATGCAATG AAGCTGTTCC
  Y
  ATGGTTGGCA ATGGTCTTCT AAGGGCATTG CTAGCCCCAA GAAAAGAGCA GCAAGATGCT
  CCATCTCAGG GATCGCCTGT GGGTGGTGTT CTCTCAAACC CTAGTCATGT TGAAGAAAAG
  CAAGAAGGGA GGGGAAAGAC TTCAGGGCTA GGGTGGAAAC TTCAGTAGTG TCAGGGGCCT
  CCCCACCCTG GCTCCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259849	NES15755780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46197480					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259849	NES15755780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45865280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1221 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	1349 bp upstream
Rr405301	regulatory region 405301	1923 bp downstream
Rr405302	regulatory region 405302	1118 bp upstream
Rr527425	regulatory region 527425	1801 bp distal
Rr527426	regulatory region 527426	1664 bp distal
Rr527427	regulatory region 527427	24 bp proximal
Rr527428	regulatory region 527428	902 bp proximal
Tssr144787	transcription start site region 144787	1282 bp upstream
Tssr144788	transcription start site region 144788	1339 bp upstream
Tssr144789	transcription start site region 144789	1373 bp upstream
Tssr144790	transcription start site region 144790	1440 bp upstream
Tssr144791	transcription start site region 144791	1451 bp upstream
Tssr144792	transcription start site region 144792	1524 bp upstream
Tssr144793	transcription start site region 144793	1905 bp upstream