rs46198635 SNP Detail

Summary

• ID
  rs46198635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66371369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGAGGA GAGAAAACAT
  ACACACAGGT ATTCAATCAG AGAACACTCA TTGGAGTAAG TTCTCTGTGT CACCATATGC
  ATTTGAGAGA TGAATCTCAG ACCATTAGAC ATGGTGGCAA ATGTCTTTAG CTGTTAAATT
  GTCTTGCTAG TCCTCCAGGA GCCTCTTTAA AAATGCTCTG AGAGTTGTGT GTTCTTCTCT
  R
  TTAAGAGGTT TCAGTCAATC CTATAGCAAT AGTGTGATCA ATTCCAAGCC TATTTTATAG
  ATGAAGAAAC TGAGAGTTAA GTGGCTCCAT CAAGGTCTTG TGTGCGGTAA GAGGCAGAGT
  CAGGACGTGA AGCCAGGCAT TCTAGCTCAA ATAAAATACT CCATATATCT TCCCTCCAAA
  CTACCAGGCC AGTACTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174723	NES16684003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46198635					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174723	NES16684003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66371369 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	721 bp upstream
Gm73278	predicted gene, 73278	600 bp upstream
Gm73415	predicted gene, 73415	182 bp downstream
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	1577 bp proximal
Tssr46528	transcription start site region 46528	1733 bp upstream
Tssr51198	transcription start site region 51198	518 bp downstream