rs46199033 SNP Detail

Summary

• ID
  rs46199033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117549040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAGCA TTATTACATT
  ATTAGCCTCA GGAACTCCGT GTGGCTTTTT TTTTTTTTTC CAAGCTGGTC GAACTCAGAA
  ATCTGCCTGC CTCTGCCTCC CAAATGCTGG GATTAAAGGC GTGCGGCACC ACCACCCGAC
  TTCCGTGTGG CTTTTAAATC ATGCCTTTAT CAAACCAAAT ACAGCTAGAT TTCTGATTGT
  Y
  GGACTCTATA CTTAACACTG GATGAGTGAA AGCCACAAAC TGGGTGTGAT GTCACATGCC
  TGTAACAGCG CAATGAGAGA CTGAGGTGAG AAGAAGAGAC CAAGGCTAAG TAAAACACAG
  ACCAGCCTGG ACTATATATC AAAATACACT TCAAAACAAA ACATTGGGGT GGGGATGGGG
  GATTTCATCC TCACAAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss52226743	NES15329391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs46199033					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226743	NES15329391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117549040 () rs orientation: forward

Symbol	Name	Function Class
Gm56970	predicted gene, 56970	1602 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Rr385357	regulatory region 385357	584 bp downstream
Tssr95924	transcription start site region 95924	1379 bp downstream