rs46200515 SNP Detail

Summary

• ID
  rs46200515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGGTCA GACAACCTGG
  GATACCTGAG ATGCAGAAAC GCTACTGTAG AGAACAGCAT GATGGTACTT GCTGTGTGTT
  CCAAAGGTAA AAGTACTGTT GAGCCTCATT CCCCAAAGCT GCAAGCTTGG TCTTACCTGT
  CTCATGGCAG CCCAAGCTAT GACATGGCAC GTCTCAGGAA TGTGTATCAT CTGAATCGGC
  Y
  GAGTTCAGAC TGCCTTCCTG TCCCACATTT TTCTGTGTCT GTTGCTCCCA ACTATTTCGC
  ACTTCCTGTT GCTCCTCCTC CTACTTGCTG AGTGACCACA CACTGCTTCC CATGGTCTGT
  ATCAACAACT AGAGTCTGTT GGTCTTTCCG AGGTGCTGTC TGTGAGCATG TCCCCTTAGC
  CATCCACCTC TGTGAGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146436943	ENSMUSSNP2495564	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320177542	CHEV_1_187410148	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46200515					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318466 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	880 bp distal
Rr425415	regulatory region 425415	1377 bp proximal