rs46200665 SNP Detail

Summary

• ID
  rs46200665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCATGC TACATAGGTA
  GCCGTCATTA CCCTTGTATC CATGACATCC ATCATTACCC AGGTATCTTC TGAGCTCTTT
  AATAGCAACC ACAGTGTGGA CTTAACACTT TGTATGTTCT GTTTGGTTTG GTTTGTTTTC
  TTGAGACAAG ATTTCTCTCT GTAGGCTGTC CTGGAACTCT CTGTAGACCA AACCGGCTCC
  R
  AACTCAAGAG ATCCACAGAC CTCAGCTTCC TGAGTGCCCA AAAAATGTGG GTTTATCAAG
  AGTAGATGTA TTACTGTGCT AAATATTGAT TTACCTTGAG AAAAATTAGT GGAGCTATGG
  TATAAGTACG TAAACATTAT TTCGTATTAA TCATCTTAAG TTCCCTGAAA TGAGTTAAGC
  TTGACAGCTA AGCTAGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320498566	CHEV_2_126757255	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46200665					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1248 bp proximal
Gm75308	predicted gene, 75308			1174 bp upstream
Rr564422	regulatory region 564422			810 bp proximal
Rr564423	regulatory region 564423			1536 bp proximal
Rr564424	regulatory region 564424			1569 bp proximal
Rr564425	regulatory region 564425			1706 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			382 bp downstream
Tssr26085	transcription start site region 26085			1474 bp downstream
Tssr26086	transcription start site region 26086			1603 bp downstream
Tssr26087	transcription start site region 26087			1634 bp downstream
Tssr26088	transcription start site region 26088			1696 bp downstream
Tssr26089	transcription start site region 26089			1710 bp downstream