rs46201818 SNP Detail

Summary

• ID
  rs46201818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTATGCT TTTTGGGTCA
  TGGCTACTCA TATTTGGCTC CAGAAATGTC TCTTACTACC CTTGAGGTGA GAGCTGTGTT
  CTTGCTTTGA CACTGGTGTG AGATCTTCAT TGTGCATAGA GTTTTCTCAC AGTAAGCACT
  TCACTTAATT TGTAGTGAAT GTGCCATTGG ACGTGCCAGA TGGGGGAAGC TGTCATAGAT
  R
  AACATCCTAA ATTTCTTGTA GTAGCTCTAA GTTAACCCAT GGATAAACTC ATTTCCCCCC
  TTCTGTCTTG TTTCAAAGGA TAGGTGACCC TTGTGTATGA AATATGTGTG GGTGTAAAGC
  TTCATTGTCT GGGATCCAAT ATCTAAGCCG AGGTCTATGG CAGCTGTTTT ACAACTATGT
  AAGTGTAGGT AAATGACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423911	NES15399000	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G
ss137738441	ENSMUSSNP5179093	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46201818					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423911	NES15399000	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655463 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1037 bp downstream