rs46202153 SNP Detail

Summary

• ID
  rs46202153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91601815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAAGAAA AAGCCCAACT
  GTACAACAGA GCTGACATGT CCTAAGAGGA TCCAAGGCTG TGGCCAAAAC CATCCTGAGC
  ACTGTTGATC CAGTTTAAAA GAATGCAGGA TACAAAGGGA ATCAAAAGAG GGAGTTGAAA
  TCTGGAGGTG ACGCTTCCAG AAGAATGGTT GGGAAAGAGC TCAGGCCTGG GCTTGAGACC
  R
  CACTCCTCTC TAGACCAGGT ACCTTCCTCA CCACAAGGAA CTTTACCTAT CTTGCTTCTG
  GAAACAGGAC CAGACTGGCA AACCAGGAGA AATAGATAGA GCGCTGTTGT ATCCTCTAAT
  TTCTCGGCAC TTCAGGATCA AAGATTATTC CAGAAGCCAG AATCCTTGTC AAAAACTACC
  CCTCACCCAG AAAGGACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52679062	NES15524188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46202153					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679062	NES15524188	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91601815 () rs orientation: forward

Symbol	Name	Function Class
Rr277507	regulatory region 277507	1015 bp distal
Rr277508	regulatory region 277508	within coordinates