rs46203489 SNP Detail

Summary

• ID
  rs46203489
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:52846306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGTCAC TGTGGTACCA
  GGTTCAGCCT CCCTTCTCAG GGTGTGCAGG TGCCACCAGC AAACTGGGGG TCCACAGTCT
  GCATAAGTCA GATACTGTTC CAGGAGGGGG TGAAGTGGAG TGGGACGGGA AGAAAAGAGA
  GTATGAAGCA GCTCTCTGAG ACAATCCTGG CTTGTTCATA TTTCTCTATT GGGGATATGG
  H
  GGTGGGTTTG AATTAAACAA AAGGTTATAT AGTTTCTGGG GAAGGGCGTG AGAATATCCA
  GGGAGGGAAA GGGCACTCAT TGCCTGAAGG ATTCTGCTAC TGAGATGCCT CGTTAGTTCG
  GCGAGGTATC CTAGGTGCTG AGTGGTCACT GATTAAGTGG GACAAGCTGG TTGGGAGTCG
  CCTAGTTGAA TGCTCTGAGG                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137742253	ENSMUSSNP2002603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss324040934	CHEV_12_53900510	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46203489					SNP	A	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52846306 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	Intron
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	within coordinates
Rr466054	regulatory region 466054	201 bp proximal