rs46204579 SNP Detail

Summary

• ID
  rs46204579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56962791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCTCTA GAAGAGCAGT
  CATTGATCTT AACCGCTGAG CCATCTTTCT AGCCCCTCAT TTACTCTTGT AAAATGTGGG
  AGTCAGGGCT GGAAAGATGG CTCCACCATG TAAGGTGGAG GAGAAAACAA TCCTAAAACA
  CAAGTCCTTA GCAATCAGGT CCTTTCAAGG CTGCATGTGC CCTATGGCAG GCCTGCCACC
  W
  CATCACACCC CAGCACTTAC TAACAAAACA ACAGTGACAA TAATAATTTT AACCAAGAAT
  ACTAGAAGTC CTATTATTAG AGATAAGAAA GTTGAGAAAG AAAACTTGGC ATGATGGCAC
  ATGCCTATAT TTGGATCACA AGTTTGAGGC CTCTCTGAGT TACACAGTAA GATCCCATCT
  CACAACAGGA AAAGGGGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136516058	ENSMUSSNP1539719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46204579					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56962791 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	1390 bp downstream
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	610 bp proximal
Rr212037	regulatory region 212037	694 bp proximal