rs46205106 SNP Detail

Summary

• ID
  rs46205106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152607102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCCAC TCCCTTCTCC
  AATAAAAGCA GCCTGCTTTG TTCTGCTTGC AAACTCCCCT TTGGACTATC TGTTATCTAA
  ATTTAACCAT TGAGATGGGG GGGGGGGGCG CGGAGGCAGG AACAAATCAT GAAGGGTCTC
  CTGGAGAAGT GGGTTGGGGC TGGGCATTAG GCAGGATGGG GGGAAAGACA GGACGGAGAA
  R
  AGAAGGCATT CAAGGGAGGC AGTTCAAAGG CAAAAGCACT CTTATTCAGT CAATTAACAA
  ATCTTTCTTG AGCACCCATG CATACCTAAT AGTAAGATCC CAGGCTCGGG GGATGCTGCA
  GTATATATGA CCAAGTCCTT GGCTTCACAG AGGAGACCTT TCTTCTGTGG AGGCCAATAG
  AGTGAATAAT AAATAATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147974084	ENSMUSSNP6469559	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46205106					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152607102 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	145 bp downstream
Cpgi12465	CpG island 12465	1280 bp proximal
D2Wsu107e	DNA segment, Chr 2, Wayne State University 107, expressed	1973 bp distal
Rr567459	regulatory region 567459	within coordinates
Rr567460	regulatory region 567460	1136 bp proximal
Rr567461	regulatory region 567461	1485 bp proximal
Tssr26855	transcription start site region 26855	177 bp downstream