rs46205404 SNP Detail

Summary

• ID
  rs46205404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCCAGTA GCCTTGTTCG
  GAGTAAGCAG CTTTATGCTT CCTTCTTGTA AGCAACCTCA TTCCTTCATA GTGTAGAAAT
  GAAAAATGTG CACTATAACC TCATCAGATT TCTTACAGGA ACCCAGGTTA CGGCAGAGAG
  CCGCAGTGCC AGTCTCTAGG CTGTCTGCGG GGCGGCGTGG TGAGGGCTGT CTGCGGGGCG
  S
  CGTGGTGAGG GCTGTCTGCG GGGTGGCGTG GTGAGGGCTG TCTGCGGGGC GCCGTGGTGA
  GTTGCAGGCT GTGCCCTGAC TTTGTCAGCT CTTACTAAAT CACGTCTAAG GATAAAGAGG
  ACAGCATTGC CTGTTGATGA GCCCAGTTCT TCATTCTGCT TTTCCTACAG TGCACTGAAC
  AGCAGAGTAG ATGGTTTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325260816	CHEV_16_84558768	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46205404					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355411 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	1134 bp upstream
Rr518505	regulatory region 518505	170 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	1122 bp proximal
Rr518508	regulatory region 518508	1253 bp proximal
Tssr139145	transcription start site region 139145	1355 bp downstream