rs46210277 SNP Detail

Summary

• ID
  rs46210277
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105169557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCATTG TTTCTATGGC
  TAATTCTAAA AAGTATAGGT TTGTTTAAAA ACGAGTATTT ATATTGGAAC TATTTAAATA
  TTCAAATTAC ATTTCACATT TGTCATTCCA AAATGTAACA TACAACACAT CTGCTATAAA
  AGTAGGTGTC AGCTTTAGTG ATTTAAACAC AAATTCTATA ATAGATTAAG TACCTTTTTA
  S
  TGGTGATTTT GTTATCATTT GAGAATTTTA TACAGGTATG GTGCATCTAT AGATACTAAT
  GATGTGGTCT GCATTTTAAA GATTTCTAAA CTAAAGTTAT AAAATATATG CATTTTAGAG
  TTGGGATACA TTCATACTAC CATTGTATAT ATAATTAAAA ACATACATGC TAATAAGTTC
  AACATATACT ACTCTATACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61208989	NES16715606	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46210277					SNP	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61208989	NES16715606	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105169557 () rs orientation: forward

Symbol	Name	Function Class
Gbp8	guanylate-binding protein 8	within coordinates
Rr119754	regulatory region 119754	704 bp proximal
Tssr52232	transcription start site region 52232	205 bp downstream