rs46211197 SNP Detail

Summary

• ID
  rs46211197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTGTCTCCA GGCATTTCTT TCAGAGAAAT TAAATTGGAA
  ATCAGCAACT CAGGGATTCA AGGTCCCTAG GAGCAAGGGG GACAAATGCA GCATTGCAAA
  Y
  TCTAGGCCCA CTGTTCTGGC CCAGTGCCAA CAGGAAGGGA GGGCTTCGTA CCCTGGGGCG
  TCTCGTAGGT TAACGTCCTC ATCTCCACCA ACGGGTCGTC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63352188	NES17507603	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C	T	T	T	C	T
ss144900243	ENSMUSSNP6836676	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46211197					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352188	NES17507603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	980 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	97 bp downstream
Tssr12874	transcription start site region 12874	303 bp downstream
Tssr12875	transcription start site region 12875	343 bp downstream