rs46211932 SNP Detail

Summary

• ID
  rs46211932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172036026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT TATTCCCATC TTCGGCTACA
  Y
  AGTGATACCC TATCCATAAA CAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007396	PARCsnp_1.17776	PARC_SEQ	INBRED	f	SNP			T	C
ss120010297	PARCsnp_1.07416	PARC_SEQ	INBRED	f	SNP			T	C
ss146183897	ENSMUSSNP2365863	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320123225	CHEV_1_174138590	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46211932					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172036026 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1435 bp downstream
Cpgi1038	CpG island 1038	1506 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1728 bp upstream
Rr396578	regulatory region 396578	919 bp downstream
Rr423485	regulatory region 423485	1666 bp distal
Rr423486	regulatory region 423486	1165 bp distal
Tssr294	transcription start site region 294	1826 bp upstream
Tssr295	transcription start site region 295	1776 bp upstream
Tssr296	transcription start site region 296	1700 bp upstream
Tssr297	transcription start site region 297	1666 bp upstream
Tssr10179	transcription start site region 10179	1864 bp upstream
Tssr15164	transcription start site region 15164	1794 bp upstream
Tssr15165	transcription start site region 15165	1704 bp upstream
Tssr15166	transcription start site region 15166	1673 bp upstream
Tssr15167	transcription start site region 15167	753 bp upstream
Tssr15168	transcription start site region 15168	1647 bp downstream
Tssr15169	transcription start site region 15169	1734 bp downstream
Tssr15170	transcription start site region 15170	1761 bp downstream
Tssr15171	transcription start site region 15171	1775 bp downstream
Tssr15172	transcription start site region 15172	1857 bp downstream
Tssr15173	transcription start site region 15173	1949 bp downstream