rs46212088 SNP Detail

Summary

• ID
  rs46212088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTCTGT AGCTCTAAAA
  CATTCTACCT GTGAGCTGAC CCACACGAGA GCAGTTAGAG CCATAGCTAC CTCCCAGAGT
  CTCCGCTGTG AAGCGGGTAT TACCCCCATT CGTCCTATAG AGACAGAATA GACTTGGAGA
  GAACAGGGTC ACAGAGCAAA ACTCAGTCCT GTGAGGTGGA GCAGGTCCAA TCTACCCACC
  R
  GGGCACCTAG AATGGGAAAT ATCTGCCTTG AGGCGGGATT AGAAGCCAGA TGTGCTCACC
  TGAAGGCCTG GGATCTCCAG GAACATAGCC AGGTCAGGGC GATAAAGCCC AGCTCATGTG
  ACACCATCCG GAGCTGAACA CACTTCTTGG AATTAGCCAC AAACCACAAA CTCTTGTGGT
  TTTGGGGCTC AGTGCTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148010282	ENSMUSSNP3085339	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320566503	CHEV_2_153763629	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46212088					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779813 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	324 bp upstream
Tssr20927	transcription start site region 20927	325 bp upstream