rs46212464 SNP Detail

Summary

• ID
  rs46212464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60058382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTGTTA TTTAGACTTT
  TTGGTCTGAT ACTGTTATTA TTAGTGTACT GGTGTCCCTA AACTCACGCA GAGTCATCAG
  TAACGTAAGA GAGAATTACA AGAAAGCATA AGAAATTAAA TGACAAAGTG AGATCTGAAA
  ATTGGAGGCA AAGGAGTAGA GTGGGTAGGG GTGTAGAAGT TGAGGAGATT GAAGGACTCA
  Y
  GTCACGTAAG TAAAGACTGA GGAGGGTAGA AAGATTGGAG TTAGAATAGG TTATGGGAAT
  GTCTTAGGAT AAGAGACACT GGGGAAGAAA GATGGTCTCT GATGCTGCCT CTGAAAAACT
  TTTTAAAGGA ATAACATGCT TTGCATCTGC AAAAAGTAAG TGGATGGAGG AAAGGCTGTG
  TGCTACTCGG ATGAGATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560005	NES15632509	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46212464					SNP	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560005	NES15632509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60058382 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	284 bp upstream
Rr502965	regulatory region 502965	835 bp proximal
Tssr4605	transcription start site region 4605	671 bp downstream
Tssr134460	transcription start site region 134460	353 bp downstream
Tssr134461	transcription start site region 134461	494 bp downstream
Tssr134462	transcription start site region 134462	581 bp downstream
Tssr134463	transcription start site region 134463	641 bp downstream
Tssr134464	transcription start site region 134464	735 bp downstream
Tssr134465	transcription start site region 134465	789 bp downstream
Tssr134466	transcription start site region 134466	802 bp downstream
Tssr134467	transcription start site region 134467	838 bp downstream
Tssr134468	transcription start site region 134468	865 bp downstream
Tssr134469	transcription start site region 134469	896 bp downstream