rs46212466 SNP Detail

Summary

• ID
  rs46212466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139411287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTGGAG TTATCACAGA
  GAAAGGAGCT TCAGTTGAGG AAATGCCTCC ATGAGATCCA GCTGTAAGGC ATTTTCTCAA
  TTAGTGATCA AGGGGGGAGG GCCCCTTGTG GGTGGTACCA TCCCTGGGCT GATAGCCTTG
  GGTTCTATAA GAAAGAAAGC TGAGCAAGCC AGTAAGTAAC ATCCCTCCAT GGCCTCTGTG
  Y
  CAATCAGTTC CTGCTTCCTG ACCTGCTTGA GTTCCAGTCT TGAATTCTTT GGGATGACCA
  GCAGTGTGGA ATTGTAAGCT GAATAAACCC TTTCCTCCCC AACTTGCTTC TTGGCCATGA
  TGTCTGTGCA GGAATAGAAA CCCTGACTAA GACAAATTGG TACCAGAATA GTGGGATATT
  CCTGTGACAA CCCGACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145588316	ENSMUSSNP262040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46212466					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139411287 () rs orientation: forward

Symbol	Name	Function Class
Aspm	abnormal spindle microtubule assembly	within coordinates
Tssr235	transcription start site region 235	22 bp downstream