rs46213026 SNP Detail

Summary

• ID
  rs46213026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99868935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCAAG AAGCCATTAG
  ACAGATGTAA TCATAATGGG ACCAAACATT CCTATAAATA AAATGTGCAC ATTTAGACCA
  CATGCGGTGC TTAAAAGCAG AGAACACAAA GGTAAGCGGA GCTGCCCTTG CATACACAAT
  GGCTCAGATG TGGTAGCAAT TCAATTGGCC CCCCGAATAA AAAATTGTGA ATTTATGGGA
  Y
  GGATGAACCC AGTATCCATT AGCTTAGAAT TCAAATGATC CTCATAGAAA ACCCAGCTGT
  GGCAACGGGA GCCATTACTC TCAAAGTAAA CTCCTCTCCT ATGATCAGTC GCCCACGTCC
  GATCTCAAGC TACAGCCAAC AGCCAGGCTG ACTCTCTGCG TTATTTGCTT TAGAAACAGC
  TGACCAAATG GGGTTTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148920121	ENSMUSSNP3608640	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46213026					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99868935 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	within coordinates
Rr119571	regulatory region 119571	within coordinates
Tssr52054	transcription start site region 52054	906 bp downstream