rs46214530 SNP Detail

Summary

• ID
  rs46214530
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46854922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGACAGA CAGGCAGTAT
  GTGAAAGATG AACCGACTAC ACAGAGTGCG GTACTATCTT GAGGCATAAG TGAGGTGGGT
  GGTAATGGGT GGGCTGCATG GTAGAATTTA GAGCACAATA AAAGGCAGAG AATAGGACGG
  AGTAAATAAG TATTATATTT ATATAACATA TATATTATAT AAGAGAAGAA CGGTGTGAAC
  K
  GAGCAAAGAG ATGCGATGAA GGCATTTCAG GAAAGGAAGG GGGCTGGGCT CCAGCTCAAA
  AGCCAAGTAC CTGATTAGGA TGTGTGAGGC CTGGCACTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTAAGC TGGTCTTTGC TACTTTGTGG GTTCTTCTTT TTCCTACCCT TTATCCAGAG
  ACCCCCCCCC CCCGCTCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62759009	NES17342730	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46214530					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759009	NES17342730	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46854922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	1961 bp proximal
Cul9	cullin 9	within coordinates
Rr527757	regulatory region 527757	1719 bp proximal