rs46216398 SNP Detail

Summary

• ID
  rs46216398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATAGAT ATAAACACTT
  ATTGTCAACA TTCTCACCTT GTTTTTAAGT TGTCATTTAG TCAGTCACTT TATTCCCAAT
  TATAAATTTC TCCCAAACAA AGGAAAATAA ACAATTGTTT TACTAGTTTA GTGTAAAGGA
  AAAAGGACTA GTGGGAAGTG GGGCAGTGAA GAAAAAAACA AACCAACACA TTATAAAAAC
  Y
  GATGCATCTT CCTCCAGACT TTCTTGGATT TAATTTACCA GCAAATCTCT TGGAAACAAA
  CTGAATCTTT CCTTTCCCTT CTTGTATCCC ATATTTCAAA CTGGAGATTC TTAGTCATAA
  GATCAGAGCC GTGAGGGGTC CTGAGAGCCA GAGCTGGCAC TGCCAGGGAA CTGTCCCAGG
  ACAGTACGTA TGCTAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147112308	ENSMUSSNP602232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320437750	CHEV_2_102292888	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46216398					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	451 bp distal
Fjx1	four jointed box 1	939 bp upstream
Rr561694	regulatory region 561694	1971 bp distal
Rr561695	regulatory region 561695	1387 bp distal
Rr561696	regulatory region 561696	142 bp distal
Rr561697	regulatory region 561697	712 bp proximal
Rr561698	regulatory region 561698	839 bp proximal
Tssr25397	transcription start site region 25397	957 bp upstream
Tssr25398	transcription start site region 25398	916 bp upstream
Tssr25399	transcription start site region 25399	888 bp upstream