rs46217648 SNP Detail

Summary

• ID
  rs46217648
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66825660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACAACC AAAAAGCTGA
  TGAGTGAGTG GGCCACTGGA CTGCAGCTAT TTAACAAAGG AAATAATGTT AAGGTCATCC
  TACTGAAGGT TTAAAAGCAG TTTTGATGTG TTCTTCAGTT TACAACTTAA AGATCCTGTT
  TACCTGCACA CAATGTCTTT TACTGAAGAT ACAAGAGCAG CTCCCAGTGA AGAGTGAGAA
  W
  TTTTTTTCTT GAGTCAATTA GAAGTAATTG GGAAATATAC AGTATGTTAT GATTCACCTA
  CAAAGTAATT AGAATCAAAG GAAACTACAC AGGGAGGCAG GCGGAATGTA CAGTCAATCA
  CTTGGCTTGG ATGTTACCAA CTACACGAGC TCAAGAATTT ACAAAGTTGA GAAACTTACT
  GCTGCTTCCC AAGACACGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61411504	NES16800892	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A		A	A	A		T
ss322989026	CHEV_9_66766185	CHEVERUD	SCREENING_POP	f	SNP								A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46217648					SNP	T	A	A	A	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411504	NES16800892	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66825660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	640 bp proximal
Rab8b	RAB8B, member RAS oncogene family	within coordinates
Rr368814	regulatory region 368814	1025 bp upstream
Rr401489	regulatory region 401489	1295 bp upstream
Rr681811	regulatory region 681811	1344 bp distal
Rr681812	regulatory region 681812	710 bp distal
Rr681813	regulatory region 681813	409 bp distal
Rr681814	regulatory region 681814	1299 bp proximal
Tssr85773	transcription start site region 85773	460 bp upstream
Tssr85774	transcription start site region 85774	487 bp upstream
Tssr90293	transcription start site region 90293	1768 bp upstream
Tssr90294	transcription start site region 90294	1 bp upstream
Tssr90295	transcription start site region 90295	788 bp downstream
Tssr90296	transcription start site region 90296	1268 bp downstream