rs46220325 SNP Detail

Summary

• ID
  rs46220325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGAAAC TCAAGAGAAA
  TGAAAAGAAC CACCTTTAGA AAACCGTTTG TCACCATCTT CACTGTTGTG AAGAAGTTCT
  CCCAGCTAGG CCTTCCTAGA AGAATTTCAG GTCCACAGCT CCTCCTACTC ACCCGGTGTC
  CACCACACCC CTTATCAAGA CCATGCATCC TGTTTCCACA CATGCCCCTG GGTGACCTTC
  Y
  CTAGCTCCTC TCAAAGGCTT GTGCATGGAA GAACCCTGGC CCACAAGTCC AGCCAACCAG
  ATCCCAGTTC CAGGTGTGTT AGTAAGAATA TATTCACAAT ATTCCTGGCA CCAAATATGT
  GGAGTTGTCC ACACCAACAG CCAGTTTCTT CCATCTTGCA CATGTCCCCT TGCCCTTCTG
  ACGAGTTGTG ACTCAGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460828	NES16446473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46220325					SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460828	NES16446473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590301 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1130 bp distal
Rr516711	regulatory region 516711	within coordinates
Rr516712	regulatory region 516712	1402 bp proximal
Tssr138713	transcription start site region 138713	674 bp upstream
Tssr141324	transcription start site region 141324	1229 bp upstream
Tssr141325	transcription start site region 141325	1200 bp upstream
Tssr141326	transcription start site region 141326	1159 bp upstream
Tssr141327	transcription start site region 141327	1136 bp upstream
Tssr141328	transcription start site region 141328	116 bp upstream
Tssr141329	transcription start site region 141329	852 bp downstream
Tssr141330	transcription start site region 141330	867 bp downstream
Tssr141331	transcription start site region 141331	880 bp downstream
Tssr141332	transcription start site region 141332	908 bp downstream
Tssr141333	transcription start site region 141333	1743 bp downstream
Tssr141334	transcription start site region 141334	1898 bp downstream