rs46220446 SNP Detail

Summary

• ID
  rs46220446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77831600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCAGGCA GAACGCTTGC
  TTAAGGTTGC CCAAGGCCCC AATTCTGTTC TCAGTACTGC GAAAACAAAA AGTGCAGACA
  CAGGACTCTG CTGGTCTAAG AAGCCAGTGT TGAGAAGCCT CCTGACTGGC CTAGGGAAGC
  CCGAGTTGCT GTCCTGATGT GGACTTGGCC CCAGTGGGTT TTCTCTACAT GGTGTGAGGT
  Y
  TGCGAGGTGT ATGCTGCACT GGGTAGGAAA GGCACCCAGG TTCCATAAGG AGCATCCTCT
  ATGCCCTGAG AATGGACGTG TCAGTCGTTA GTGGTTTGAG GACACGAGGT CATTCTGCTC
  TGTTAGAGCT GGTGCGCTGG GCTGGTGTTT CAGCCGGAGG CACCTGCTGC CCCTTCTGTT
  CTCTTGGGAT CCCTCCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136662643	ENSMUSSNP2591872	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46220446					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77831600 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	within coordinates
Tssr86226	transcription start site region 86226	1046 bp downstream
Tssr86227	transcription start site region 86227	990 bp downstream
Tssr86228	transcription start site region 86228	630 bp downstream
Tssr86229	transcription start site region 86229	578 bp downstream
Tssr86230	transcription start site region 86230	106 bp upstream