rs46220917 SNP Detail

Summary

• ID
  rs46220917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13010806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTTTAA TCTAAAATAA
  CCCCAGCTCC CAGAACAGGA TCTGGTTCTA CACTGACTGG AGATATCTTC CTTTCTTATG
  GCTTTCTTCA CAGTTCAGTC TTCCAGGCTG CTTTTTGTAG ATGTGCAAGA CCTGGCCCAC
  CAACTTCGCT AGCTGGCTCT GGTATTTGGG GGACAATCAA TTCTCCCCTG TCTTTTGGCT
  Y
  GTTTCAGTAT GCCTCTCACT CTCTACAATG GCCTCTACTA AACCCTGTAT ATCAAGTCTG
  GGTTGTTTTG TATTGAGTCT TATTTATTTC CTGGCTCAGA CTCCATCTCA GTAAGTATCC
  TTCCTTGAAT CTGTCCTGCC TGGCTTTTCT GTACTTGGCA GAATCAGTGG GCTTCTCTCC
  CTGGTATTAA ACCTGTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970724	NES16158012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46220917					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970724	NES16158012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13010806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1437 bp proximal
Lig1	ligase I, DNA, ATP-dependent	433 bp upstream
Rr400108	regulatory region 400108	1761 bp upstream
Rr642459	regulatory region 642459	819 bp proximal
Rr642460	regulatory region 642460	1254 bp proximal
Rr642461	regulatory region 642461	1546 bp proximal
Rr642462	regulatory region 642462	1793 bp proximal
Rr642463	regulatory region 642463	1947 bp proximal
Tssr64537	transcription start site region 64537	275 bp upstream
Tssr64538	transcription start site region 64538	374 bp upstream
Tssr64539	transcription start site region 64539	1664 bp upstream
Tssr64540	transcription start site region 64540	1898 bp upstream
Tssr64541	transcription start site region 64541	1996 bp upstream
Tssr70659	transcription start site region 70659	1781 bp downstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates