rs46221071 SNP Detail

Summary

• ID
  rs46221071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55909077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGAAGAA CAGGGGACAA
  AGCTTTCCCA AAAAATTCTG GAGTGAGGAG CCAAGCTGCT GCCAGGCCTT CTCTATGACT
  GCAAGGGCTT GAATACAGTG AGACCAGGAC AAACGCTGCC TCCTTCTGGG TCTGAATACA
  GACTGGCAAG AAAGTAGGAC AGGCTTCCTT GTAAGACCCG AAGTCTTCAG GCTGGATCGG
  Y
  CTCCAGAGCT CAAAGCCTCC CGGGGTCCCC CTAGTTCCCA TCAAGCCTCG CGCAGGGCCC
  CGAGGGTGTC AGCCCTCCAA GTTCAGGAAA GGCATGGTTT TCCTTCCCGC CTCTCCCTTA
  AGGCGCAGCG GCCAACCCTG CACCGAGTCT TGGAAAGTCT GGAAACGCTC CCACCTTCAC
  TTTAATTAGC ATCTTCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405529	NES17238142	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46221071					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405529	NES17238142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55909077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	16 bp proximal
Gmpr2	guanosine monophosphate reductase 2	321 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	within coordinates
Rr492563	regulatory region 492563	414 bp proximal
Rr492564	regulatory region 492564	494 bp proximal
Tssr125802	transcription start site region 125802	468 bp downstream
Tssr125803	transcription start site region 125803	630 bp upstream
Tssr125804	transcription start site region 125804	688 bp upstream
Tssr125805	transcription start site region 125805	751 bp upstream
Tssr128855	transcription start site region 128855	238 bp downstream
Tssr128856	transcription start site region 128856	253 bp downstream
Tssr128857	transcription start site region 128857	444 bp downstream
Tssr128858	transcription start site region 128858	516 bp downstream
Tssr128859	transcription start site region 128859	549 bp downstream
Tssr128860	transcription start site region 128860	573 bp downstream