rs46221181 SNP Detail

Summary

• ID
  rs46221181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTGACAG ACAAAGCAAG
  GTGTTAGTGC CAAATGGGGA GGTAGATGCC TTCATAGAAA TCAGAAATGA GAACATGTAC
  ATTATCCTTA GATGGGTGTA GTGGGCCATC TCTTTTTCCC AATGGAAAAG GAAGTGGGGT
  GTGTGTATGG CAAAGAAGAT GGTGAAGAAC TTGCTGTTAT AGCAGGGCAA CCCACTAGGA
  Y
  TGAGAAACAC AGGGAAAGGA TGTGTACCGA CTCTGCCTTC TGTTCTGACC TCCATAGCTT
  TCCTCATCCT GGGCTTGAGT ATTCTAACCA CGTATGGCGT CCAGGCCATT GCCAGACTGG
  AAGCCTGGAG CCTGGCTCTT CTCGCCCTGT TCCTTGTCCT CTGCGTTGCC GTCATTCTGA
  CCATTTGGAG GCAGCCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60600904	NES16305395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46221181					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600904	NES16305395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366942 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	829 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	1268 bp downstream
Tssr77039	transcription start site region 77039	53 bp upstream
Tssr77040	transcription start site region 77040	98 bp upstream
Tssr77041	transcription start site region 77041	1006 bp upstream
Tssr77042	transcription start site region 77042	1148 bp upstream
Tssr77043	transcription start site region 77043	1743 bp upstream
Tssr77044	transcription start site region 77044	1933 bp upstream
Tssr77045	transcription start site region 77045	1955 bp upstream