rs46221489 SNP Detail

Summary

• ID
  rs46221489
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCCAATCT AGCCCCTGGG AGCTCGCTCT GGCTTCTGAC
  TCTTCTGTTA CCATTCATTT TTCACAGTCA CTGGGCAGGG GTGGGGGGGG GGGAGATGCT
  T
  TTCTGATTCT TTCCTAAAAG GTCATATTTT GCCATACGGA ATGCTGCTGT GCGCCACCTG
  AAATGAGTCC ATGTTAGCCC AGTGATGAAA TGTTTCGGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133506706	ENSMUSSNP4402587	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46221489					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639744 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1849 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	1050 bp distal
Rr399817	regulatory region 399817	901 bp downstream
Rr636156	regulatory region 636156	1899 bp distal
Rr636158	regulatory region 636158	1359 bp distal
Rr636159	regulatory region 636159	796 bp distal
Rr636160	regulatory region 636160	797 bp proximal
Tssr58076	transcription start site region 58076	1996 bp downstream
Tssr58077	transcription start site region 58077	1917 bp downstream
Tssr58078	transcription start site region 58078	1006 bp downstream
Tssr58079	transcription start site region 58079	787 bp downstream
Tssr58080	transcription start site region 58080	440 bp downstream
Tssr58081	transcription start site region 58081	5 bp downstream
Tssr58082	transcription start site region 58082	336 bp upstream
Tssr58083	transcription start site region 58083	1956 bp upstream