rs46222663 SNP Detail

Summary

• ID
  rs46222663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GTTGTATGGC TGGAGAGGTG
  R
  CTCAGCGGGG TTAAGAGCGC TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009192	PARCsnp_1.18674	PARC_SEQ	INBRED	f	SNP			G	A
ss120012391	PARCsnp_1.08463	PARC_SEQ	INBRED	f	SNP			G	A
ss146188001	ENSMUSSNP3485282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320124229	CHEV_1_174257078	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46222663					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	21 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	Intron
Rr423524	regulatory region 423524	1567 bp distal
Rr423526	regulatory region 423526	1831 bp distal
Rr423527	regulatory region 423527	657 bp distal
Rr423528	regulatory region 423528	1029 bp distal
Rr423529	regulatory region 423529	614 bp distal
Rr423530	regulatory region 423530	87 bp distal
Rr423531	regulatory region 423531	1271 bp proximal
Tssr15210	transcription start site region 15210	722 bp upstream
Tssr15211	transcription start site region 15211	709 bp upstream
Tssr15212	transcription start site region 15212	692 bp upstream