rs46223172 SNP Detail

Summary

• ID
  rs46223172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36595381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGCACACT GGAACAAACC TCCCCCAGAG
  CCTTTACATC TCCTCCTGAT CCTGCAACTG GCCTCTGCCC ACAAGAGCCC TGGGGGTCTC
  CCAGAAGAGC AAGGAGAGGA ACTTAGTCAG CAAGCACTAG GCGTGGGCAG TCATCAAAAG
  Y
  CGCCTGTGGC CTCCAGGCCA TCCCTACTCC CTCCCTTCAA CAGGGAGTTG TGTGGAAAAA
  AATAAAAGAG GGACTCCCCC TCATTGGCTC CTTCTGGCCT TAAAGGTTTC AGAGTTTCTT
  ACAATAACCA TAAAAAACAG GGCTTGCTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148927578	ENSMUSSNP4737058	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss319688951	CHEV_1_36613145	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46223172					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36595381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	299 bp proximal
D430040D24Rik	RIKEN cDNA D430040D24 gene	1401 bp upstream
Rr409349	regulatory region 409349	586 bp distal
Rr409350	regulatory region 409350	948 bp proximal
Rr409351	regulatory region 409351	1216 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	within coordinates
Tssr40	transcription start site region 40	1395 bp upstream
Tssr11262	transcription start site region 11262	361 bp downstream
Tssr11263	transcription start site region 11263	1217 bp downstream
Tssr11264	transcription start site region 11264	1882 bp downstream
Tssr11265	transcription start site region 11265	1914 bp downstream