rs46224559 SNP Detail

Summary

• ID
  rs46224559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127130351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGCT GGGCGGCGGG
  GGGGGGGGGT AGGGGGGGCG GCATCCTTTT ATTCCCCCAC ACCACTCGAA GGCTAGTCTC
  CTCCGCATCT CCAGTGAAGA CAGCATCCGG AGCTCGGGGG CGGAAAAGAG GCGGGTGGTC
  GTCGTCGGGG CTAGCCCACC CGGAGGATAA AGTCTGGGTG GCAGGTTCTC CCAGAGCCAG
  Y
  GGAGGGCCCC TCGCCTCTTC CATCCCCCAC TCTTGGCTTT GCAGTGAAAT TCCAGCGGGG
  AGGGGATCTT GGGGGTGGGA GAGGTGGCCT GAGGCTGGGA GGGCTGCGGA GGAGGGGGGA
  AGAGGGTCGC TGGACGGAGG CCCCTCTGTC TGGAGATGGG AAAGTTAAAG CGCGTCCTGC
  AGGAGAGGCC CTCTGCGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60943869	NES16183194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs46224559					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60943869	NES16183194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127130351 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	1195 bp upstream
Cpgi18035	CpG island 18035	919 bp distal
Cpgi18036	CpG island 18036	423 bp distal
Cpgi18037	CpG island 18037	within coordinates
Cpgi18038	CpG island 18038	670 bp proximal
Gm56941	predicted gene, 56941	within coordinates
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	651 bp downstream
Tssr59022	transcription start site region 59022	814 bp downstream
Tssr59023	transcription start site region 59023	125 bp downstream
Tssr59024	transcription start site region 59024	254 bp upstream
Tssr63378	transcription start site region 63378	914 bp upstream
Tssr63379	transcription start site region 63379	1339 bp downstream